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1

The genome of the stress-tolerant wild tomato species Solanum pennellii

Bolger, Anthony, Scossa, Federico, Bolger, Marie E, Lanz, Christa, Maumus, Florian, Tohge, Takayuki, Quesneville, Hadi, Alseekh, Saleh, Sørensen, Iben, Lichtenstein, Gabriel, Fich, Eric A, Conte, Mari

Journal:

Nature Genetics

Year:

2014

Language:

english

File:

PDF, 632 KB

english, 2014

2

Shared Subgenome Dominance Following Polyploidization Explains Grass Genome Evolutionary Plasticity from a Seven Protochromosome Ancestor with 16K Protogenes

Murat, F., Zhang, R., Guizard, S., Flores, R., Armero, A., Pont, C., Steinbach, D., Quesneville, H., Cooke, R., Salse, J.

Journal:

Genome Biology and Evolution

Year:

2014

Language:

english

File:

PDF, 3.49 MB

english, 2014

3

Formation of plant metabolic gene clusters within dynamic chromosomal regions

Field, B., Fiston-Lavier, A.-S., Kemen, A., Geisler, K., Quesneville, H., Osbourn, A. E.

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 882 KB

english, 2011

4

Understanding Brassicaceae evolution through ancestral genome reconstruction

Murat, Florent, Louis, Alexandra, Maumus, Florian, Armero, Alix, Cooke, Richard, Quesneville, Hadi, Crollius, Hugues Roest, Salse, Jerome

Journal:

Year:

2015

Language:

english

File:

PDF, 3.06 MB

english, 2015

5

Erratum to: Understanding Brassicaceae evolution through ancestral genome reconstruction

Murat, Florent, Louis, Alexandra, Maumus, Florian, Armero, Alex, Cook, Richard, Quesneville, Hadi, Crollius, Hugues Roest, Salse, Jerome

Journal:

Year:

2016

Language:

english

File:

PDF, 334 KB

english, 2016

6

Reconciling the evolutionary origin of bread wheat ( Triticum aestivum )

El Baidouri, Moaine, Murat, Florent, Veyssiere, Maeva, Molinier, Mélanie, Flores, Raphael, Burlot, Laura, Alaux, Michael, Quesneville, Hadi, Pont, Caroline, Salse, Jérôme

Journal:

New Phytologist

Year:

2016

Language:

english

File:

PDF, 1.84 MB

english, 2016

7

Progress in single-access information systems for wheat and rice crop improvement

Scheben, Armin, Chan, Chon-Kit Kenneth, Mansueto, Locedie, Mauleon, Ramil, Larmande, Pierre, Alexandrov, Nickolai, Wing, Rod A, McNally, Kenneth L, Quesneville, Hadi, Edwards, David

Journal:

Briefings in Bioinformatics

Year:

2018

Language:

english

File:

PDF, 224 KB

english, 2018

8

Neue Bereitungsart des Bariumsuperoxyds

Hr. Quesneville

Journal:

Annalen der Physik

Year:

1827

File:

PDF, 86 KB

1827

9

Verfahren um rothe und weisse Purpursäure zugleich zu erhalten

Hr. Quesneville D. J.

Journal:

Annalen der Physik

Year:

1828

Language:

german

File:

PDF, 139 KB

german, 1828

10

Verfahren um rothe und weisse Purpursäure zugleich zu erhalten

Hr. Quesneville d. J.

Journal:

Annalen der Physik

Year:

1828

Language:

german

File:

PDF, 139 KB

german, 1828

11

Ein Mittel, das Eisen vom Mangan zu scheiden

Quesneville d. Sohn

Journal:

Archiv der Pharmazie

Year:

1827

File:

PDF, 115 KB

1827

12

Verfahren zur Unterscheidung des Baryts on Strontian;

Julia Fontanelle, Quesneville

Journal:

Archiv der Pharmazie

Year:

1828

File:

PDF, 73 KB

1828

13

Darstellung des Lithions

Quesneville jun.

Journal:

Archiv der Pharmazie

Year:

1830

File:

PDF, 37 KB

1830

14

Genetic Algorithm-based Model of Evolutionary Dynamics of Class II Transposable Elements

HADI QUESNEVILLE, DOMINIQUE ANXOLABÉHÈRE

Journal:

Journal of Theoretical Biology

Year:

2001

Language:

english

File:

PDF, 295 KB

english, 2001

15

Can transposable element copy number distribution parameters be estimated from natural populations of Drosophila melanogaster?

Hadi Quesneville, Mariano Katz, Dominique Anxolabéhère

Journal:

Journal of Evolutionary Biology

Year:

1994

Language:

english

File:

PDF, 1.14 MB

english, 1994

16

The triangle test statistic (TTS): a test of genetic homogeneity using departure from the triangle constraints in IBD distribution among affected sib-pairs

M. H. DIZIER, H. QUESNEVILLE, B. PRUM, H. SELINGER-LENEMAN, F. CLERGET-DARPOUX

Journal:

Annals of Human Genetics

Year:

2000

Language:

english

File:

PDF, 225 KB

english, 2000

17

Search for multifactorial disease susceptibility genes in founder populations

C. BOURGAIN, E. GENIN, H. QUESNEVILLE, F. CLERGET-DARPOUX

Journal:

Annals of Human Genetics

Year:

2000

Language:

english

File:

PDF, 441 KB

english, 2000

18

DrosophilaPelement: Transposition, regulation and evolution

Dario Coen, Bruno Lemaitre, Marion Delattre, hadi Quesneville, Stéphane Ronsseray, Martine Simonelig, Dominique Higuet, Monique Lehmann, Catherine Montchamp, Danielle Nouaud, Dominique Anxolabéhère

Journal:

Year:

1994

Language:

english

File:

PDF, 1.71 MB

english, 1994

19

Detection of New Transposable Element Families inDrosophila melanogasterandAnopheles gambiaeGenomes

Hadi Quesneville, Danielle Nouaud, Dominique Anxolabéhère

Journal:

Journal of Molecular Evolution

Year:

2003

Language:

english

File:

PDF, 179 KB

english, 2003

20

How to deal with model equivalence in the MASC method?

F. GUYON, P. MARGARITTE-JEANNIN, H. QUESNEVILLE, F. CLERGET-DARPOUX

Journal:

Annals of Human Genetics

Year:

1999

Language:

english

File:

PDF, 260 KB

english, 1999

21

Indication of linkage and genetic heterogeneity for asthma and atopy on chromosomes 8p and 12q in 107 French EGEA families

Dizier, M-H, Quesneville, H, Besse-Schmittler, C, Guilloud-Bataille, M, Selinger-Leneman, H, Clerget-Darpoux, F, Demenais, F

Journal:

European Journal of Human Genetics

Year:

2003

Language:

english

File:

PDF, 98 KB

english, 2003

22

A simulation of P element horizontal transfer in Drosophila

Hadi Quesneville, Dominique Anxolabéhère

Journal:

Year:

1997

Language:

english

File:

PDF, 159 KB

english, 1997

23

Detection of transposable elements by their compositional bias

Olivier Andrieu, Anna-Sophie Fiston, Dominique Anxolabéhère, Hadi Quesneville

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 320 KB

english, 2004

24

Pelements and MITE relatives in the whole genome sequence ofAnopheles gambiae

Hadi Quesneville, Danielle Nouaud, Dominique Anxolabéhère

Journal:

Year:

2006

Language:

english

File:

PDF, 478 KB

english, 2006

25

LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss

Clémentine Vitte, Olivier Panaud, Hadi Quesneville

Journal:

Year:

2007

Language:

english

File:

PDF, 416 KB

english, 2007

26

Dynamics of Transposable Elements in Metapopulations: A Model of P Element Invasion in Drosophila

Hadi Quesneville, Dominique Anxolabéhère

Journal:

Theoretical Population Biology

Year:

1998

Language:

english

File:

PDF, 594 KB

english, 1998

27

Comparative analysis of BAC and whole genome shotgun sequences from an Anopheles gambiae region related to Plasmodium encapsulation

Karin Eiglmeier, Patrick Wincker, Laurence Cattolico, Veronique Anthouard, Inge Holm, Ralph Eckenberg, Hadi Quesneville, Olivier Jaillon, Frank H. Collins, Jean Weissenbach, Paul T. Brey, Charles W. R

Journal:

Insect Biochemistry and Molecular Biology

Year:

2005

Language:

english

File:

PDF, 422 KB

english, 2005

28

Spip and Squiq, two novel rice non-autonomous LTR retro-element families related to RIRE3 and RIRE8

Clementine Vitte, Cristian Chaparro, Hadi Quesneville, Olivier Panaud

Journal:

Year:

2007

Language:

english

File:

PDF, 1.25 MB

english, 2007

29

Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets

Nicolas Buisine, Hadi Quesneville, Vincent Colot

Journal:

Year:

2008

Language:

english

File:

PDF, 743 KB

english, 2008

30

On the Probability of Identity States in Permutable Populations: Reply to Cannings

Emmanuelle Génin, Hadi Quesneville, Françoise Clerget-Darpoux

Journal:

The American Journal of Human Genetics

Year:

1998

Language:

english

File:

PDF, 40 KB

english, 1998

31

Genome-wide studies highlight indirect links between human replication origins and gene regulation

Cadoret, J.-C., Meisch, F., Hassan-Zadeh, V., Luyten, I., Guillet, C., Duret, L., Quesneville, H., Prioleau, M.-N.

Journal:

Proceedings of the National Academy of Sciences

Year:

2008

Language:

english

File:

PDF, 442 KB

english, 2008

32

Recurrent insertion and duplication generate networks of transposable element sequences in theDrosophila melanogastergenome

Casey M Bergman, Hadi Quesneville, Dominique Anxolabéhère…

Journal:

Year:

2006

Language:

english

File:

PDF, 1.01 MB

english, 2006

33

Distribution, evolution, and diversity of retrotransposons at the flamenco locus reflect the regulatory properties of piRNA clusters

Zanni, V., Eymery, A., Coiffet, M., Zytnicki, M., Luyten, I., Quesneville, H., Vaury, C., Jensen, S.

Journal:

Proceedings of the National Academy of Sciences

Year:

2013

Language:

english

File:

PDF, 723 KB

english, 2013

34

Tedna: a transposable element de novo assembler

Zytnicki, M., Akhunov, E., Quesneville, H.

Journal:

Year:

2014

Language:

english

File:

PDF, 57 KB

english, 2014

35

Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution

Geering, Andrew D. W., Maumus, Florian, Copetti, Dario, Choisne, Nathalie, Zwickl, Derrick J., Zytnicki, Matthias, McTaggart, Alistair R., Scalabrin, Simone, Vezzulli, Silvia, Wing, Rod A., Quesnevill

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 655 KB

english, 2014

36

Studying the organization of genes encoding plant cell wall degrading enzymes in C hrysomela tremula provides insights into a leaf beetle genome

Pauchet, Y., Saski, C. A., Feltus, F. A., Luyten, I., Quesneville, H., Heckel, D. G.

Journal:

Insect Molecular Biology

Year:

2014

Language:

english

File:

PDF, 656 KB

english, 2014

37

A model of segmental duplication formation in Drosophila melanogaster

Fiston-Lavier, A.-S., Anxolabehere, D., Quesneville, H.

Journal:

Genome Research

Year:

2007

Language:

english

File:

PDF, 1.13 MB

english, 2007

38

Impact of transposable elements on insect genomes and biology

Maumus, Florian, Fiston-Lavier, Anna-Sophie, Quesneville, Hadi

Journal:

Current Opinion in Insect Science

Year:

2015

Language:

english

File:

PDF, 434 KB

english, 2015

39

Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thaliana

Maumus, Florian, Quesneville, Hadi

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 2.52 MB

english, 2014

40

Whole genome comparative analysis of transposable elements provides new insight into mechanisms of their inactivation in fungal genomes

Amselem, Joëlle, Lebrun, Marc-Henri, Quesneville, Hadi

Journal:

Year:

2015

Language:

english

File:

PDF, 2.43 MB

english, 2015

41

Organization and evolution of transposable elements along the bread wheat chromosome 3B

Daron, Josquin, Glover, Natasha, Pingault, Lise, Theil, Sébastien, Jamilloux, Véronique, Paux, Etienne, Barbe, Valérie, Mangenot, Sophie, Alberti, Adriana, Wincker, Patrick, Quesneville, Hadi, Feuille

Journal:

Year:

2014

Language:

english

File:

PDF, 1.94 MB

english, 2014

42

Discovering and detecting transposable elements in genome sequences

Bergman, C. M., Quesneville, H.

Journal:

Briefings in Bioinformatics

Year:

2007

Language:

english

File:

PDF, 135 KB

english, 2007

43

Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis

Ahmed, I., Sarazin, A., Bowler, C., Colot, V., Quesneville, H.

Journal:

Nucleic Acids Research

Year:

2011

Language:

english

File:

PDF, 10.02 MB

english, 2011

44

Karyotype and Gene Order Evolution from Reconstructed Extinct Ancestors Highlight Contrasts in Genome Plasticity of Modern Rosid Crops

Murat, F., Zhang, R., Guizard, S., Gavranovi , H., Flores, R., Steinbach, D., Quesneville, H., Tannier, E., Salse, J.

Journal:

Genome Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 2.67 MB

english, 2015

45

Combined Evidence Annotation of Transposable Elements in Genome Sequences

Quesneville, Hadi, Bergman, Casey M., Andrieu, Olivier, Autard, Delphine, Nouaud, Danielle, Ashburner, Michael, Anxolabehere, Dominique

Journal:

PLoS Computational Biology

Year:

2005

Language:

english

File:

PDF, 284 KB

english, 2005

46

Recurrent Recruitment of the THAP DNA-Binding Domain and Molecular Domestication of the P-Transposable Element

Quesneville, H.

Journal:

Molecular Biology and Evolution

Year:

2004

Language:

english

File:

PDF, 329 KB

english, 2004

47

Deep Investigation of Arabidopsis thaliana Junk DNA Reveals a Continuum between Repetitive Elements and Genomic Dark Matter

Maumus, Florian, Quesneville, Hadi, Jordan, I. King

Journal:

Year:

2014

Language:

english

File:

PDF, 2.19 MB

english, 2014

48

Efficient comparison of sets of intervals with NC-lists

M. Zytnicki, Y. Luo, H. Quesneville

Year:

2013

Language:

english

File:

PDF, 847 KB

english, 2013

49

In search of lost trajectories

Flutre, Timothée, Permal, Emmanuelle, Quesneville, Hadi

Journal:

Mobile Genetic Elements

Year:

2011

Language:

english

File:

PDF, 1.74 MB

english, 2011

50

Impact and insights from ancient repetitive elements in plant genomes

Maumus, Florian, Quesneville, Hadi

Journal:

Current Opinion in Plant Biology

Year:

2016

Language:

english

File:

PDF, 1.26 MB

english, 2016